The Scramble conversion tool
نویسنده
چکیده
MOTIVATION The reference CRAM file format implementation is in Java. We present 'Scramble': a new C implementation of SAM, BAM and CRAM file I/O. RESULTS The C implementation of for CRAM is 1.5-1.7× slower than BAM at decoding but 1.8-2.6× faster at encoding. We see file size savings of 34-55%. AVAILABILITY AND IMPLEMENTATION Source code is available at http://sourceforge.net/projects/staden/files/io_lib/ under the BSD software licence.
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PREPRINT The Scramble Conversion Tool
Motivation: The reference CRAM file format implementation is in Java. We present “Scramble”: a new C implementation of SAM, BAM and CRAM file I/O. Results: The C API for CRAM is 1.5–1.7x slower than BAM at decoding, but 1.8–2.6x faster at encoding. We see file size savings of 40–50%. Availability: Source code is available from http://sourceforge.net/ projects/staden/files/io lib/ Contact: jkb@s...
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